East Africa regional publications

2017

Steven A Brown, Salma Abbas, Mary-Ann Davies, Torsak Bunupuradah, Annette H Sohn, Karl-Günter Technau, Lorna Renner, Valériane Leroy, Andrew Edmonds, Marcel Yotebieng, Catherine C McGowan, Stephany N Duda, Lynne Mofenson, Beverly Musick, Kara Wools-Kaloustian (2017) Pediatric Cancer Burden and Treatment Resources within the Pediatric IeDEA Consortium., Journal of acquired immune deficiency syndromes (1999), p. 1, url, doi:10.1097/QAI.0000000000001453

Constantin T Yiannoutsos, Kara K Wools-Kaloustian, Beverly S Musick, Batya Elul (2017) Rejoinder to "Lost Opportunities Concerning Loss-to-Follow-Up: A Response to Elul et al." by Strassle and colleagues., Journal of acquired immune deficiency syndromes (1999) 75(2), p. e56-e57, url, doi:10.1097/QAI.0000000000001353

Cristin Q Fritz, Meridith Blevins, Mary Lou Lindegren, Kara Wools-Kaloutsian, Beverly S Musick, Morna Cornell, Kelly Goodwin, Dianne Addison, Jean Claude Dusingize, Eugène Messou, Armel Poda, Stephany N Duda, Catherine C McGowan, Matthew G Law, Richard D Moore, Aimee Freeman, Denis Nash, C William Wester (2017) Comprehensiveness of HIV care provided at global HIV treatment sites in the IeDEA consortium: 2009 and 2014., Journal of the International AIDS Society 20(1), p. 1-14, url, doi:10.7448/IAS.20.1.20933

Mary Mahy, Martina Penazzato, Andrea Ciaranello, Lynne Mofenson, Constantin T Yianoutsos, Mary-Ann Davies, John Stover (2017) Improving estimates of children living with HIV from the Spectrum AIDS Impact Model., AIDS (London, England) 31 Suppl 1, p. S13-S22, url, doi:10.1097/QAD.0000000000001306

James G Carlucci, Meridith Blevins Peratikos, Aaron M Kipp, Mary L Lindegren, Quy T Du, Lorna Renner, Gary Reubenson, John Ssali, Marcel Yotebieng, Anna M Mandalakas, Mary-Ann Davies, Marie Ballif, Lukas Fenner, April C Pettit, International Epidemiology Databases to Evaluate AIDS (IeDEA) Network (2017) Tuberculosis Treatment Outcomes Among HIV/TB-Coinfected Children in the International Epidemiology Databases to Evaluate AIDS (IeDEA) Network., Journal of acquired immune deficiency syndromes (1999) 75(2), p. 156-163, url, doi:10.1097/QAI.0000000000001335

Kate Clouse, Meridith Blevins, Mary Lou Lindegren, Marcel Yotebieng, Dung Thi Nguyen, Alfred Omondi, Denna Michael, Djimon Marcel Zannou, Gabriela Carriquiry, April Pettit, International Epidemiologic Databases to Evaluate AIDS (IeDEA) collaboration (2017) Low implementation of Xpert MTB/RIF among HIV/TB co-infected adults in the International epidemiologic Databases to Evaluate AIDS (IeDEA) program., PloS one 12(2), Madhukar Pai (ed.), p. e0171384, url, doi:10.1371/journal.pone.0171384

Alana T Brennan, Mary-Ann Davies, Jacob Bor, Gilles Wandeler, Kathryn Stinson, Robin Wood, Hans Prozesky, Frank Tanser, Geoffrey Fatti, Andrew Boulle, Izukanji Sikazwe, Kara Wool-Kaloustian, Constantin Yuannoutsos, Valériane Leroy, Nathalie de Rekeneire, Matthew P Fox (2017) Has the phasing out of stavudine in accordance with changes in WHO guidelines led to a decrease in single-drug substitutions in first-line antiretroviral therapy for HIV in sub-Saharan Africa?, AIDS (London, England) 31(1), p. 147-157, pubmed, doi:10.1097/QAD.0000000000001307

Peter F Rebeiro, Giorgos Bakoyannis, Beverly S Musick, Ronald S Braithwaite, Kara K Wools-Kaloustian, Winstone Nyandiko, Fatma Some, Paula Braitstein, Constantin T Yiannoutsos (2017) Observational Study of the Effect of Patient Outreach on Return to Care: The Earlier the Better., Journal of acquired immune deficiency syndromes (1999) 76(2), p. 141-148, pubmed, doi:10.1097/QAI.0000000000001474

Nanina Anderegg, Leigh F Johnson, Elizabeth Zaniewski, Keri N Althoff, Eric Balestre, Matthew Law, Denis Nash, Bryan E Shepherd, Constantin T Yiannoutsos, Matthias Egger, IeDEA, MeSH consortia (2017) All-cause mortality in HIV-positive adults starting combination antiretroviral therapy: correcting for loss to follow-up., AIDS (London, England) 31 Suppl 1, p. S31-S40, pubmed, doi:10.1097/QAD.0000000000001321

Liangyuan Hu, Joseph W Hogan, Ann W Mwangi, Abraham Siika (2017) Modeling the causal effect of treatment initiation time on survival: Application to HIV/TB co-infection., Biometrics, url, doi:10.1111/biom.12780

Giorgos Bakoyannis, Menggang Yu, Constantin T Yiannoutsos (2017) Semiparametric regression on cumulative incidence function with interval-censored competing risks data., Statistics in medicine 36(23), p. 3683-3707, url, doi:10.1002/sim.7350

Patrick A Coffie, Matthias Egger, Michael J Vinikoor, Marcel Zannou, Lameck Diero, Akouda Patassi, Mark H Kuniholm, Moussa Seydi, Guillaume Bado, Ponsiano Ocama, Monique I Andersson, Eugène Messou, Albert Minga, Philippa Easterbrook, Kathryn Anastos, François Dabis, Gilles Wandeler, IeDEA collaboration (2017) Trends in hepatitis B virus testing practices and management in HIV clinics across sub-Saharan Africa., BMC infectious diseases 17(Suppl 1), p. 706, url, doi:10.1186/s12879-017-2768-z

2016

Jack J Olney, Paula Braitstein, Jeffrey W Eaton, Edwin Sang, Monicah Nyambura, Sylvester Kimaiyo, Ellen McRobie, Joseph W Hogan, Timothy B Hallett (2016) Evaluating strategies to improve HIV care outcomes in Kenya: a modelling study., The lancet. HIV 3(12), p. e592-e600, url, doi:10.1016/S2352-3018(16)30120-5

Beth Rachlis, Giorgos Bakoyannis, Philippa Easterbrook, Becky Genberg, Ronald Scott Braithwaite, Craig R Cohen, Elizabeth A Bukusi, Andrew Kambugu, Mwebesa Bosco Bwana, Geoffrey R Somi, Elvin H Geng, Beverly Musick, Constantin T Yiannoutsos, Kara Wools-Kaloustian, Paula Braitstein (2016) Facility-Level Factors Influencing Retention of Patients in HIV Care in East Africa., PloS one 11(8), Graciela Andrei (ed.), p. e0159994, url, doi:10.1371/journal.pone.0159994

Beth Rachlis, Rakhi Karwa, Celia Chema, Sonak Pastakia, Sten Olsson, Kara Wools-Kaloustian, Beatrice Jakait, Mercy Maina, Marcel Yotebieng, Nagalingeswaran Kumarasamy, Aimee Freeman, Nathalie de Rekeneire, Stephany N Duda, Mary-Ann Davies, Paula Braitstein (2016) Targeted Spontaneous Reporting: Assessing Opportunities to Conduct Routine Pharmacovigilance for Antiretroviral Treatment on an International Scale., Drug safety 39(10), p. 959-76, url, doi:10.1007/s40264-016-0434-9

Damalie Nakanjako, Agnes N Kiragga, Beverly S Musick, Constantin T Yiannoutsos, Kara Wools-Kaloustian, Lameck Diero, Patrick Oyaro, Emanuel Lugina, John C Ssali, Andrew Kambugu, Philippa Easterbrook (2016) Frequency and impact of suboptimal immune recovery on first-line antiretroviral therapy within the International Epidemiologic Databases to Evaluate AIDS in East Africa., AIDS (London, England) 30(12), p. 1913-22, url, doi:10.1097/QAD.0000000000001085

M Katherine Charles, Mary Lou Lindegren, C William Wester, Meridith Blevins, Timothy R Sterling, Nguyen Thi Dung, Jean Claude Dusingize, Divine Avit-Edi, Nicolas Durier, Barbara Castelnuovo, Gertrude Nakigozi, Claudia P Cortes, Marie Ballif, Lukas Fenner, International epidemiology Databases to Evaluate AIDS (IeDEA) Collaboration (2016) Implementation of Tuberculosis Intensive Case Finding, Isoniazid Preventive Therapy, and Infection Control ("Three I's") and HIV-Tuberculosis Service Integration in Lower Income Countries., PloS one 11(4), Juraj Ivanyi (ed.), p. e0153243, url, doi:10.1371/journal.pone.0153243

Batya Elul, Kara K Wools-Kaloustian, Yingfeng Wu, Beverly S Musick, Harriet Nuwagaba-Biribonwoha, Denis Nash, Samuel Ayaya, Elizabeth Bukusi, Pius Okong, Juliana Otieno, Deo Wabwire, Andrew Kambugu, Constantin T Yiannoutsos (2016) Untangling the Relationship Between Antiretroviral Therapy Use and Incident Pregnancy: A Marginal Structural Model Analysis Using Data From 47,313 HIV-Positive Women in East Africa., Journal of acquired immune deficiency syndromes (1999) 72(3), p. 324-32, url, doi:10.1097/QAI.0000000000000963

Suzue Saito, Philani Mpofu, E Jane Carter, Lameck Diero, Kara K Wools-Kaloustian, Constantin T Yiannoutsos, Musick S Beverly, Simon Tsiouris, Geoffrey R Somi, John Ssali, Denis Nash, Batya Elul (2016) Implementation and Operational Research: Declining Tuberculosis Incidence Among People Receiving HIV Care and Treatment Services in East Africa, 2007-2012., Journal of acquired immune deficiency syndromes (1999) 71(4), p. e96-e106, url, doi:10.1097/QAI.0000000000000896

Esther Freeman, Aggrey Semeere, Megan Wenger, Mwebesa Bwana, F Chite Asirwa, Naftali Busakhala, Emmanuel Oga, Elima Jedy-Agba, Vivian Kwaghe, Kenneth Iregbu, Antoine Jaquet, Francois Dabis, Habakkuk Azinyui Yumo, Jean Claude Dusingize, David Bangsberg, Kathryn Anastos, Sam Phiri, Julia Bohlius, Matthias Egger, Constantin Yiannoutsos, Kara Wools-Kaloustian, Jeffrey Martin (2016) Pitfalls of practicing cancer epidemiology in resource-limited settings: the case of survival and loss to follow-up after a diagnosis of Kaposi's sarcoma in five countries across sub-Saharan Africa., BMC cancer 16(1), p. 65, url, doi:10.1186/s12885-016-2080-0

Paola Rebora, Laura Antolini, David V Glidden, Maria Grazia Valsecchi (2016) Crude incidence in two-phase designs in the presence of competing risks., BMC medical research methodology 16(1), p. 5, url, doi:10.1186/s12874-015-0103-1

Aggrey Semeere, Megan Wenger, Naftali Busakhala, Nathan Buziba, Mwebesa Bwana, Winnie Muyindike, Erin Amerson, Toby Maurer, Timothy McCalmont, Philip LeBoit, Beverly Musick, Constantin Yiannoutsos, Robert Lukande, Barbara Castelnuovo, Miriam Laker-Oketta, Andrew Kambugu, David Glidden, Kara Wools-Kaloustian, Jeffrey Martin (2016) A prospective ascertainment of cancer incidence in sub-Saharan Africa: The case of Kaposi sarcoma., Cancer medicine 5(5), p. 914-28, url, doi:10.1002/cam4.618

Carol S Camlin, Torsten B Neilands, Thomas A Odeny, Rita Lyamuya, Alice Nakiwogga-Muwanga, Lameck Diero, Mwebesa Bwana, Paula Braitstein, Geoffrey Somi, Andrew Kambugu, Elizabeth A Bukusi, David V Glidden, Kara K Wools-Kaloustian, Megan Wenger, Elvin H Geng, East Africa International Epidemiologic Databases to Evaluate AIDS (EA-IeDEA) Consortium (2016) Patient-reported factors associated with reengagement among HIV-infected patients disengaged from care in East Africa., AIDS (London, England) 30(3), p. 495-502, url, doi:10.1097/QAD.0000000000000931

Annabelle Gourlay, Alison Wringe, Jim Todd, Caoimhe Cawley, Denna Michael, Richard Machemba, Benjamin Clark, Clemens Masesa, Milly Marston, Mark Urassa, Basia Zaba (2016) Uptake of services for prevention of mother-to-child transmission of HIV in a community cohort in rural Tanzania from 2005 to 2012., BMC health services research 16(1), p. 4, url, doi:10.1186/s12913-015-1249-6

Jenell S Coleman, Michelle S Cespedes, Susan Cu-Uvin, Rose J Kosgei, May Maloba, Jean Anderson, Timothy Wilkin, Antoine Jaquet, Julia Bohlius, Kathryn Anastos, Kara Wools-Kaloustian (2016) An Insight Into Cervical Cancer Screening and Treatment Capacity in Sub Saharan Africa., Journal of lower genital tract disease 20(1), p. 31-7, url, doi:10.1097/LGT.0000000000000165

Erin Amerson, Carina Martin Woodruff, Amy Forrestel, Megan Wenger, Timothy McCalmont, Philip LeBoit, Toby Maurer, Miriam Laker-Oketta, Winnie Muyindike, Mwebesa Bwana, Nathan Buziba, Naftali Busakhala, Kara Wools-Kaloustian, Jeffrey Martin (2016) Accuracy of Clinical Suspicion and Pathologic Diagnosis of Kaposi Sarcoma in East Africa., Journal of acquired immune deficiency syndromes (1999) 71(3), p. 295-301, url, doi:10.1097/QAI.0000000000000862

Elvin H Geng, Thomas A Odeny, Rita Lyamuya, Alice Nakiwogga-Muwanga, Lameck Diero, Mwebesa Bwana, Paula Braitstein, Geoffrey Somi, Andrew Kambugu, Elizabeth Bukusi, Megan Wenger, Torsten B Neilands, David V Glidden, Kara Wools-Kaloustian, Constantin Yiannoutsos, Jeffrey Martin (2016) Retention in Care and Patient-Reported Reasons for Undocumented Transfer or Stopping Care Among HIV-Infected Patients on Antiretroviral Therapy in Eastern Africa: Application of a Sampling-Based Approach., Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 62(7), p. 935-944, url, doi:10.1093/cid/civ1004

2015

Annabelle Gourlay, Alison Wringe, Jim Todd, Denna Michael, Georges Reniers, Mark Urassa, Prosper Njau, Deborah Kajoka, Levina Lema, Basia Zaba (2015) Challenges with routine data sources for PMTCT programme monitoring in East Africa: insights from Tanzania, Global Health Action 8(1), p. 29987, url, doi:10.3402/gha.v8.29987

Andreas D Haas, Olivia Keiser, Eric Balestre, Steve Brown, Emmanuel Bissagnene, Cleophas Chimbetete, François Dabis, Mary-Ann Davies, Christopher J Hoffmann, Patrick Oyaro, Rosalind Parkes-Ratanshi, Steven J Reynolds, Izukanji Sikazwe, Kara Wools-Kaloustian, D Marcel Zannou, Gilles Wandeler, Matthias Egger, IeDEA southern Africa, east Africa, and west Africa (2015) Monitoring and switching of first-line antiretroviral therapy in adult treatment cohorts in sub-Saharan Africa: collaborative analysis., The lancet. HIV 2(7), p. e271-8, url, doi:10.1016/S2352-3018(15)00087-9

Giorgos Bakoyannis, Constantin T Yiannoutsos (2015) Impact of and Correction for Outcome Misclassification in Cumulative Incidence Estimation., PloS one 10(9), Antonio Guilherme Pacheco (ed.), p. e0137454, url, doi:10.1371/journal.pone.0137454

Diana Huisin ʼt Veld, Eric Balestre, Jozefien Buyze, Joris Menten, Antoine Jaquet, David A Cooper, Francois Dabis, Constantin T Yiannoutsos, Lameck Diero, Portia Mutevedzi, Matthew P Fox, Eugene Messou, Christopher J Hoffmann, Hans W Prozesky, Matthias Egger, Jennifer J Hemingway-Foday, Robert Colebunders, International Epidemiologic Databases to Evaluate AIDS (IeDEA) (2015) Determinants of Weight Evolution Among HIV-Positive Patients Initiating Antiretroviral Treatment in Low-Resource Settings., Journal of acquired immune deficiency syndromes (1999) 70(2), p. 146-54, url, doi:10.1097/QAI.0000000000000691

Manuel Koller, Kunjal Patel, Benjamin H Chi, Kara Wools-Kaloustian, Fatoumata Dicko, Kulkanya Chokephaibulkit, Cleophas Chimbetete, Rohan Hazra, Samual Ayaya, Valeriane Leroy, Huu Khanh Trong, Matthias Egger, Mary-Ann Davies, IeDEA, NISDI, PHACS and IMPAACT 219C Studies (2015) Authors' Reply: Early Initiation of Antiretroviral Therapy Among Young Children: A Long Way to Go., Journal of acquired immune deficiency syndromes (1999) 70(2), p. e71-2, url, doi:10.1097/QAI.0000000000000773

Helen Byakwaga, Peter W Hunt, Miriam Laker-Oketta, David V Glidden, Yong Huang, Bosco M Bwana, A Rain Mocello, John Bennett, Victoria Walusansa, Sheila C Dollard, David R Bangsberg, Edward K Mbidde, Jeffrey N Martin (2015) The Kynurenine Pathway of Tryptophan Catabolism and AIDS-Associated Kaposi Sarcoma in Africa., Journal of acquired immune deficiency syndromes (1999) 70(3), p. 296-303, url, doi:10.1097/QAI.0000000000000747

Andrea L Ciaranello, Landon Myer, Kathleen Kelly, Sarah Christensen, Kristen Daskilewicz, Katie Doherty, Linda-Gail Bekker, Taige Hou, Robin Wood, Jordan A Francke, Kara Wools-Kaloustian, Kenneth A Freedberg, Rochelle P Walensky (2015) Point-of-care CD4 testing to inform selection of antiretroviral medications in south african antenatal clinics: a cost-effectiveness analysis., PloS one 10(3), Ravi Jhaveri (ed.), p. e0117751, url, doi:10.1371/journal.pone.0117751

Annabelle Gourlay, Alison Wringe, Jim Todd, Caoimhe Cawley, Denna Michael, Richard Machemba, Georges Reniers, Mark Urassa, Basia Zaba (2015) Factors associated with uptake of services to prevent mother-to-child transmission of HIV in a community cohort in rural Tanzania., Sexually transmitted infections 91(7), p. 520-7, url, doi:10.1136/sextrans-2014-051907

Andrea L Ciaranello, Kathleen Doherty, Martina Penazzato, Jane C Lindsey, Linda Harrison, Kathleen Kelly, Rochelle P Walensky, Shaffiq Essajee, Elena Losina, Lulu Muhe, Kara Wools-Kaloustian, Samuel Ayaya, Milton C Weinstein, Paul Palumbo, Kenneth A Freedberg (2015) Cost-effectiveness of first-line antiretroviral therapy for HIV-infected African children less than 3 years of age., AIDS (London, England) 29(10), p. 1247-59, url, doi:10.1097/QAD.0000000000000672

Miriam O Laker-Oketta, Megan Wenger, Aggrey Semeere, Barbara Castelnuovo, Andrew Kambugu, Robert Lukande, F Chite Asirwa, Naftali Busakhala, Nathan Buziba, Lameck Diero, Kara Wools-Kaloustian, Robert Matthew Strother, Mwebesa Bwana, Winnie Muyindike, Erin Amerson, Edward Mbidde, Toby Maurer, Jeffrey Martin (2015) Task Shifting and Skin Punch for the Histologic Diagnosis of Kaposi's Sarcoma in Sub-Saharan Africa: A Public Health Solution to a Public Health Problem., Oncology 89(1), p. 60-5, url, doi:10.1159/000375165

Marcel Yotebieng, Tammy Meyers, Frieda Behets, Mary-Ann Davies, Olivia Keiser, Kapella Zacharia Ngonyani, Rita E Lyamuya, Azar Kariminia, Rawiwan Hansudewechakul, Valeriane Leroy, Sikiratou Koumakpai, Jamie Newman, Annelies Van Rie (2015) Age-specific and sex-specific weight gain norms to monitor antiretroviral therapy in children in low-income and middle-income countries., AIDS (London, England) 29(1), p. 101-9, url, doi:10.1097/QAD.0000000000000506

Beth Rachlis, Daniel Ochieng, Elvin Geng, Elyne Rotich, Vincent Ochieng, Beryl Maritim, Samson Ndege, Violet Naanyu, Jeffrey N Martin, Alfred Keter, Paul Ayuo, Lameck Diero, Monicah Nyambura, Paula Braitstein (2015) Implementation and operational research: evaluating outcomes of patients lost to follow-up in a large comprehensive care treatment program in western Kenya., Journal of acquired immune deficiency syndromes (1999) 68(4), p. e46-55, url, doi:10.1097/QAI.0000000000000492

Manuel Koller, Keri N Althoff, Mary-Ann Davies, Matthias Egger (2015) Authors' reply: immunodeficiency at the start of combination antiretroviral therapy: steady improvement or step changes?, Journal of acquired immune deficiency syndromes (1999) 68(1), p. e16-7, url, doi:10.1097/QAI.0000000000000399

Manuel Koller, Kunjal Patel, Benjamin H Chi, Kara Wools-Kaloustian, Fatoumata Dicko, Kulkanya Chokephaibulkit, Cleophas Chimbetete, Dorita Avila, Rohan Hazra, Samual Ayaya, Valeriane Leroy, Huu Khanh Truong, Matthias Egger, Mary-Ann Davies, IeDEA, NISDI, PHACS and IMPAACT 219C studies (2015) Immunodeficiency in children starting antiretroviral therapy in low-, middle-, and high-income countries., Journal of acquired immune deficiency syndromes (1999) 68(1), p. 62-72, url, doi:10.1097/QAI.0000000000000380

A K Forrestel, A Naujokas, J N Martin, T A Maurer, T H McCalmont, M O Laker-Opwonya, G Mulyowa, N Busakhala, Erin H Amerson (2015) Bacillary angiomatosis masquerading as Kaposi's sarcoma in East Africa., Journal of the International Association of Providers of AIDS Care 14(1), p. 21-5, url, doi:10.1177/2325957414521497

Rodrigo Cerda, Freddy Perez, Rosa Maria S M Domingues, Paula M Luz, Beatriz Grinsztejn, Valdilea G Veloso, Sonja Caffe, Jordan A Francke, Kenneth A Freedberg, Andrea L Ciaranello (2015) Prenatal Transmission of Syphilis and Human Immunodeficiency Virus in Brazil: Achieving Regional Targets for Elimination., Open forum infectious diseases 2(2), p. ofv073, url, doi:10.1093/ofid/ofv073

Menggang Yu, Constantin T Yiannoutsos (2015) Marginal and Conditional Distribution Estimation from Double-Sampled Semi-Competing Risks Data., Scandinavian journal of statistics, theory and applications 42(1), p. 87-103, pubmed, doi:10.1111/sjos.12096

Annabelle Gourlay, Alison Wringe, Jim Todd, Denna Michael, Georges Reniers, Mark Urassa, Prosper Njau, Deborah Kajoka, Levina Lema, Basia Zaba (2015) Challenges with routine data sources for PMTCT programme monitoring in East Africa: insights from Tanzania., Global health action 8, p. 29987, pubmed

Elvin H Geng, Thomas A Odeny, Rita E Lyamuya, Alice Nakiwogga-Muwanga, Lameck Diero, Mwebesa Bwana, Winnie Muyindike, Paula Braitstein, Geoffrey R Somi, Andrew Kambugu, Elizabeth A Bukusi, Megan Wenger, Kara K Wools-Kaloustian, David V Glidden, Constantin T Yiannoutsos, Jeffrey Martin (2015) Estimation of Mortality among HIV-infected people on antiretroviral therapy treatment in east Africa: a sampling based approach in an observational, multisite, cohort study., The lancet. HIV 2(3), p. e107-e116, pubmed, doi:10.1016/S2352-3018(15)00002-8

Marie Ballif, Lorna Renner, Jean Claude Dusingize, Valeriane Leroy, Samuel Ayaya, Kara Wools-Kaloustian, Claudia P Cortes, Catherine C McGowan, Claire Graber, Anna M Mandalakas, Lynne M Mofenson, Matthias Egger, Ketut Dewi Kumara Wati, Revathy Nallusamy, Gary Reubenson, Mary-Ann Davies, Lukas Fenner, International Epidemiologic Databases to Evaluate AIDS (IeDEA), S. International Epidemiologic Databases to Evaluate AIDS IeDEA, K. Anastos, M. Ballif, J. Bashi, W. Bishai, A. Boulle, P. Braitstein, G. Carriquiry, J. E. Carter, P. Cegielski, C. Chimbetete, J. Conrad, C. Cortes, M.-A. Davies, L. Diero, S. Duda, N. Durier, J. C. Dusingize, M. Egger, T. F. Eboua, L. Fenner, A. Gasser, E. Geng, J. C. Gnokori, L. Hardwicke, C. Hoffmann, R. Huebner, N. Kancheya, S. Kiertiburanakul, P. Kim, D. Lameck, V. Leroy, C. Lewden, M. L. Lindegren, A. Mandalakas, M. Maskew, R. McKaig, L. Mofenson, M. Mpoudi-Etame, B. Okwara, S. Phiri, W. Prasitsuebsai, A. Petit, H. Prozesky, S. E. Reid, L. Renner, G. Reubenson, A. Sohn, T. Sterling, Q. Vo, D. Walker, F. Wehbe, C. Wejse, W. Wester, C. Williams, R. Wood, K. Wools-Kaloustian, Z. Yao, E. Yunihastuti, E. Abrams, J. Ananworanich, K. Anastos, A. Azondekon, M. B. Frieda Behets, A. Boulle, P. Braitstein, P. Cahn, C. Cesar, A. Ciaranello, J. Conrad, F. Dabis, M.-A. Davies, A. Edmonds, M. Egger, L. Feinstein, C. Graber, L. Hardwicke, R. Hazra, D. Hoover, R. Huebner, O. Keiser, V. Leroy, M. L. Lindegren, M. C. Magneres, C. McGowan, R. McKaig, L. Messerschmidt, L. Mofenson, M. Mpoudi-Etame, H. N. Biribonwoha, G. Sharp, A. Sohn, Q. Vo, R. Vreeman, D. Walker, F. Wehbe, W. Wester, C. Williams, K. Wools-Kaloustian, C. Worrell, C. Yiannoutsos, B. Zwickl (2015) Tuberculosis in Pediatric Antiretroviral Therapy Programs in Low- and Middle-Income Countries: Diagnosis and Screening Practices., Journal of the Pediatric Infectious Diseases Society 4(1), p. 30-8, url, doi:10.1093/jpids/piu020

Elvin H Geng, Torsten B Neilands, Rodolphe Thièbaut, Mwebesa Bosco Bwana, Denis Nash, Richard D Moore, Robin Wood, Djimon Marcel Zannou, Keri N Althoff, Poh Lian Lim, Jean B Nachega, Philippa J Easterbrook, Andrew Kambugu, Francesca Little, Gertrude Nakigozi, Damalie Nakanjako, Valerian Kiggundu, Patrick Chung Ki Li, David R Bangsberg, Matthew P Fox, HansW Prozesky, Peter W Hunt, Mary-Ann Davies, Steven J Reynolds, Matthias Egger, Constantin T Yiannoutsos, Eric V Vittinghoff, Steven G Deeks, Jeffrey N Martin (2015) CD41 T cell recovery during suppression of HIV replication: an international comparison of the immunological efficacy of antiretroviral therapy in North America, Asia and Africa., International journal of epidemiology 44(1), p. 251-63, pubmed

Becky L Genberg, Violet Naanyu, Juddy Wachira, Joseph W Hogan, Edwin Sang, Monicah Nyambura, Michael Odawa, Corey Duefield, Samson Ndege, Paula Braitstein (2015) Linkage to and engagement in HIV care in western Kenya: an observational study using population-based estimates from home-based counselling and testing., The lancet. HIV 2(1), p. e20-6, pubmed, doi:10.1016/S2352-3018(14)00034-4

2014

Stephany N Duda, Amanda M Farr, Mary Lou Lindegren, Meridith Blevins, C William Wester, Kara Wools-Kaloustian, Didier K Ekouevi, Matthias Egger, Jennifer Hemingway-Foday, David A Cooper, Richard D Moore, Catherine C McGowan, Denis Nash (2014) Characteristics and comprehensiveness of adult HIV care and treatment programmes in Asia-Pacific, sub-Saharan Africa and the Americas: results of a site assessment conducted by the International epidemiologic Databases to Evaluate AIDS (IeDEA) Collaboration, Journal of the International AIDS Society 17(1), url, doi:10.7448/IAS.17.1.19045

Annabelle Gourlay, Alison Wringe, Isolde Birdthistle, Gerry Mshana, Denna Michael, Mark Urassa (2014) "It is like that, we didn't understand each other": exploring the influence of patient-provider interactions on prevention of mother-to-child transmission of HIV service use in rural Tanzania., PloS one 9(9), Nathan Maclyn Thielman (ed.), p. e106325, url, doi:10.1371/journal.pone.0106325

Agnes N Kiragga, Judith J Lok, Beverly S Musick, Ronald J Bosch, Ann Mwangi, Kara K Wools-Kaloustian, Constantin T Yiannoutsos (2014) CD4 trajectory adjusting for dropout among HIV-positive patients receiving combination antiretroviral therapy in an East African HIV care centre, Journal of the International AIDS Society 17(1), url, doi:10.7448/IAS.17.1.18957

Maya Petersen, Constantin T Yiannoutsos, Amy Justice, Matthias Egger (2014) Observational research on NCDs in HIV-positive populations: conceptual and methodological considerations., Journal of acquired immune deficiency syndromes (1999) 67 Suppl 1, p. S8-16, url, doi:10.1097/QAI.0000000000000253

Alexander J Lankowski, Alexander C Tsai, Michael Kanyesigye, Mwebesa Bwana, Jessica E Haberer, Megan Wenger, Jeffrey N Martin, David R Bangsberg, Peter W Hunt, Mark J Siedner (2014) Empiric deworming and CD4 count recovery in HIV-infected Ugandans initiating antiretroviral therapy., PLoS neglected tropical diseases 8(8), Judd L. Walson (ed.), p. e3036, url, doi:10.1371/journal.pntd.0003036

M Ballif, V Nhandu, R Wood, J C Dusingize, E J Carter, C P Cortes, C C McGowan, L Diero, C Graber, L Renner, D Hawerlander, S Kiertiburanakul, Q T Du, T R Sterling, M Egger, L Fenner, International epidemiological Databases to Evaluate AIDS (IeDEA) (2014) Detection and management of drug-resistant tuberculosis in HIV-infected patients in lower-income countries., The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease 18(11), p. 1327-36, url, doi:10.5588/ijtld.14.0106

Stephany N Duda, Amanda M Farr, Mary Lou Lindegren, Meridith Blevins, C William Wester, Kara Wools-Kaloustian, Didier K Ekouevi, Matthias Egger, Jennifer Hemingway-Foday, David A Cooper, Richard D Moore, Catherine C McGowan, Denis Nash, International Epidemiologic Databases to Evaluate AIDS (IeDEA) Collaboration (2014) Characteristics and comprehensiveness of adult HIV care and treatment programmes in Asia-Pacific, sub-Saharan Africa and the Americas: results of a site assessment conducted by the International epidemiologic Databases to Evaluate AIDS (IeDEA) Collaboration., Journal of the International AIDS Society 17, p. 19045, pubmed

Maya L Petersen, Linh Tran, Elvin H Geng, Steven J Reynolds, Andrew Kambugu, Robin Wood, David R Bangsberg, Constantin T Yiannoutsos, Steven G Deeks, Jeffrey N Martin (2014) Delayed switch of antiretroviral therapy after virologic failure associated with elevated mortality among HIV-infected adults in Africa., AIDS (London, England) 28(14), p. 2097-107, pubmed, doi:10.1097/QAD.0000000000000349

Agnes N Kiragga, Judith J Lok, Beverly S Musick, Ronald J Bosch, Ann Mwangi, Kara K Wools-Kaloustian, Constantin T Yiannoutsos, East Africa IeDEA Regional Consortium (2014) CD4 trajectory adjusting for dropout among HIV-positive patients receiving combination antiretroviral therapy in an East African HIV care centre., Journal of the International AIDS Society 17, p. 18957, pubmed

Annabelle Gourlay, Gerry Mshana, Isolde Birdthistle, Grace Bulugu, Basia Zaba, Mark Urassa (2014) Using vignettes in qualitative research to explore barriers and facilitating factors to the uptake of prevention of mother-to-child transmission services in rural Tanzania: a critical analysis., BMC medical research methodology 14(1), p. 21, url, doi:10.1186/1471-2288-14-21

Ronald Scott Braithwaite, Kimberly A Nucifora, Christopher Toohey, Jason Kessler, Lauren M Uhler, Sherry M Mentor, Daniel Keebler, Timothy Hallett (2014) How do different eligibility guidelines for antiretroviral therapy affect the cost-effectiveness of routine viral load testing in sub-Saharan Africa?, AIDS (London, England) 28 Suppl 1, p. S73-83, url, doi:10.1097/QAD.0000000000000110

Ming-Wen An, Constantine E Frangakis, Constantin T Yiannoutsos (2014) Choosing profile double-sampling designs for survival estimation with application to President's Emergency Plan for AIDS Relief evaluation., Statistics in medicine 33(12), p. 2017-29, url, doi:10.1002/sim.6087

Andrea Ciaranello, Zhigang Lu, Samuel Ayaya, Elena Losina, Beverly Musick, Rachel Vreeman, Kenneth A Freedberg, Elaine J Abrams, Lisa Dillabaugh, Katie Doherty, John Ssali, Constantin T Yiannoutsos, Kara Wools-Kaloustian (2014) Incidence of World Health Organization stage 3 and 4 events, tuberculosis and mortality in untreated, HIV-infected children enrolling in care before 1 year of age: an IeDEA (International Epidemiologic Databases To Evaluate AIDS) East Africa regional analysis., The Pediatric infectious disease journal 33(6), p. 623-9, url, doi:10.1097/INF.0000000000000223

Matthias IeDEA and ART Cohort Collaborations, Dorita Avila, Keri N Althoff, Catrina Mugglin, Kara Wools-Kaloustian, Manuel Koller, François Dabis, Denis Nash, Thomas Gsponer, Somnuek Sungkanuparph, Catherine McGowan, Margaret May, David Cooper, Cleophas Chimbetete, Marcelo Wolff, Ann Collier, Hamish McManus, Mary-Ann Davies, Dominique Costagliola, Brenda Crabtree-Ramirez, Romanee Chaiwarith, Angela Cescon, Morna Cornell, Lameck Diero, Praphan Phanuphak, Adrien Sawadogo, Jochen Ehmer, Serge P Eholie, Patrick C K Li, Matthew P Fox, Neel R Gandhi, Elsa González, Christopher K C Lee, Christopher J Hoffmann, Andrew Kambugu, Olivia Keiser, Rossana Ditangco, Hans Prozesky, Fiona Lampe, Nagalingeswaran Kumarasamy, Mari Kitahata, Emmanuel Lugina, Rita Lyamuya, Saphonn Vonthanak, Valeria Fink, Antonella d'Arminio Monforte, Paula Mendes Luz, Yi-Ming A Chen, Albert Minga, Jordi Casabona, Albert Mwango, Jun Y Choi, Marie-Louise Newell, Elizabeth A Bukusi, Kapella Ngonyani, Tuti P Merati, Juliana Otieno, Mwebesa B Bosco, Sam Phiri, Oon T Ng, Kathryn Anastos, Jürgen Rockstroh, Ignacio Santos, Shinichi Oka, Geoffrey Somi, Christoph Stephan, Ramon Teira, Deo Wabwire, Gilles Wandeler, Andrew Boulle, Peter Reiss, Robin Wood, Benjamin H Chi, Carolyn Williams, Jonathan A Sterne, Matthias Egger (2014) Immunodeficiency at the start of combination antiretroviral therapy in low-, middle-, and high-income countries., Journal of acquired immune deficiency syndromes (1999) 65(1), p. e8-16, url, doi:10.1097/QAI.0b013e3182a39979

2013

Andrea L Ciaranello, Bethany L Morris, Rochelle P Walensky, Milton C Weinstein, Samuel Ayaya, Kathleen Doherty, Valeriane Leroy, Taige Hou, Sophie Desmonde, Zhigang Lu, Farzad Noubary, Kunjal Patel, Lynn Ramirez-Avila, Elena Losina, George R Seage, Kenneth A Freedberg (2013) Validation and calibration of a computer simulation model of pediatric HIV infection., PloS one 8(12), Ravi Jhaveri (ed.), p. e83389, url, doi:10.1371/journal.pone.0083389

Lukas Fenner, Marie Ballif, Claire Graber, Venerandah Nhandu, Jean Claude Dusingize, Claudia P Cortes, Gabriela Carriquiry, Kathryn Anastos, Daniela Garone, Eefje Jong, Joachim Charles Gnokoro, Omar Sued, Samuel Ajayi, Lameck Diero, Kara Wools-Kaloustian, Sasisopin Kiertiburanakul, Barbara Castelnuovo, Charlotte Lewden, Nicolas Durier, Timothy R Sterling, Matthias Egger, International epidemiological Databases to Evaluate AIDS (IeDEA) (2013) Tuberculosis in antiretroviral treatment programs in lower income countries: availability and use of diagnostics and screening., PloS one 8(10), Pere-Joan Cardona (ed.), p. e77697, url, doi:10.1371/journal.pone.0077697

Elvin H Geng, Mwebesa B Bwana, Winnie Muyindike, David V Glidden, David R Bangsberg, Torsten B Neilands, Ingrid Bernheimer, Nicolas Musinguzi, Constantin T Yiannoutsos, Jeffrey N Martin (2013) Failure to initiate antiretroviral therapy, loss to follow-up and mortality among HIV-infected patients during the pre-ART period in Uganda., Journal of acquired immune deficiency syndromes (1999) 63(2), p. e64-71, url, doi:10.1097/QAI.0b013e31828af5a6

Marita Mann, Lameck Diero, Emmanuel Kemboi, Fidelis Mambo, Mary Rono, Wilfred Injera, Allison Delong, Leeann Schreier, Kara Wools-Kaloustian, Kara W Kaloustian, John Sidle, Nathan Buziba, Rami Kantor (2013) Antiretroviral treatment interruptions induced by the Kenyan postelection crisis are associated with virological failure., Journal of acquired immune deficiency syndromes (1999) 64(2), p. 220-4, url, doi:10.1097/QAI.0b013e31829ec485

Paul Ayuo, Beverly Musick, Hai Liu, Paula Braitstein, Winstone Nyandiko, Boaz Otieno-Nyunya, Adrian Gardner, Kara Wools-Kaloustian (2013) Frequency and factors associated with adherence to and completion of combination antiretroviral therapy for prevention of mother to child transmission in western Kenya, Journal of the International AIDS Society 16(1), url, doi:10.7448/IAS.16.1.17994

Abraham M Siika, Constantin T Yiannoutsos, Kara K Wools-Kaloustian, Beverly S Musick, Ann W Mwangi, Lameck O Diero, Sylvester N Kimaiyo, William M Tierney, Jane E Carter (2013) Active tuberculosis is associated with worse clinical outcomes in HIV-infected African patients on antiretroviral therapy., PloS one 8(1), Yolande Richard (ed.), p. e53022, url, doi:10.1371/journal.pone.0053022

Paul Ayuo, Beverly Musick, Hai Liu, Paula Braitstein, Winstone Nyandiko, Boaz Otieno-Nyunya, Adrian Gardner, Kara Wools-Kaloustian (2013) Frequency and factors associated with adherence to and completion of combination antiretroviral therapy for prevention of mother to child transmission in western Kenya., Journal of the International AIDS Society 16, p. 17994, pubmed

2012

Constantin Theodore Yiannoutsos, Leigh Francis Johnson, Andrew Boulle, Beverly Sue Musick, Thomas Gsponer, Eric Balestre, Matthew Law, Bryan E Shepherd, Matthias Egger, International Epidemiologic Databases to Evaluate AIDS (IeDEA) Collaboration (2012) Estimated mortality of adult HIV-infected patients starting treatment with combination antiretroviral therapy., Sexually transmitted infections 88 Suppl 2(Suppl 2), p. i33-43, url, doi:10.1136/sextrans-2012-050658

Aggrey S Semeere, Naftali Busakhala, Jeffrey N Martin (2012) Impact of antiretroviral therapy on the incidence of Kaposi's sarcoma in resource-rich and resource-limited settings., Current opinion in oncology 24(5), p. 522-30, url, doi:10.1097/CCO.0b013e328355e14b

Elvin H Geng, David V Glidden, David R Bangsberg, Mwebesa Bosco Bwana, Nicholas Musinguzi, Denis Nash, John Z Metcalfe, Constantin T Yiannoutsos, Jeffrey N Martin, Maya L Petersen (2012) A causal framework for understanding the effect of losses to follow-up on epidemiologic analyses in clinic-based cohorts: the case of HIV-infected patients on antiretroviral therapy in Africa., American journal of epidemiology 175(10), p. 1080-7, url, doi:10.1093/aje/kwr444

2011

David M Moore, Constantin T Yiannoutsos, Beverly S Musick, Jordan Tappero, Richard Degerman, James Campbell, Willy Were, Frank Kaharuza, Lorraine N Alexander, Robert Downing, Jonathan Mermin (2011) Determinants of early and late mortality among HIV-infected individuals receiving home-based antiretroviral therapy in rural Uganda., Journal of acquired immune deficiency syndromes (1999) 58(3), p. 289-96, url, doi:10.1097/QAI.0b013e3182303716

Elvin H Geng, Peter W Hunt, Lameck O Diero, Sylvester Kimaiyo, Geofrey R Somi, Pius Okong, David R Bangsberg, Mwebesa B Bwana, Craig R Cohen, Juliana A Otieno, Deo Wabwire, Batya Elul, Denis Nash, Philippa J Easterbrook, Paula Braitstein, Beverly S Musick, Jeffrey N Martin, Constantin T Yiannoutsos, Kara Wools-Kaloustian (2011) Trends in the clinical characteristics of HIV-infected patients initiating antiretroviral therapy in Kenya, Uganda and Tanzania between 2002 and 2009., Journal of the International AIDS Society 14(1), p. 46, url, doi:10.1186/1758-2652-14-46

Elvin H Geng, David V Glidden, Mwebesa Bosco Bwana, Nicolas Musinguzi, Nneka Emenyonu, Winnie Muyindike, Katerina A Christopoulos, Torsten B Neilands, Constantin T Yiannoutsos, Steven G Deeks, David R Bangsberg, Jeffrey N Martin (2011) Retention in care and connection to care among HIV-infected patients on antiretroviral therapy in Africa: estimation via a sampling-based approach., PloS one 6(7), Landon Myer (ed.), p. e21797, url, doi:10.1371/journal.pone.0021797

R Scott Braithwaite, Kimberly A Nucifora, Constantin T Yiannoutsos, Beverly Musick, Sylvester Kimaiyo, Lameck Diero, Melanie C Bacon, Kara Wools-Kaloustian (2011) Alternative antiretroviral monitoring strategies for HIV-infected patients in east Africa: opportunities to save more lives?, Journal of the International AIDS Society 14(1), p. 38, url, doi:10.1186/1758-2652-14-38

Paula Braitstein, Julia Songok, Rachel C Vreeman, Kara K Wools-Kaloustian, Pamela Koskei, Leahbell Walusuna, Samwel Ayaya, Winstone Nyandiko, Constantin Yiannoutsos (2011) "Wamepotea" (they have become lost): outcomes of HIV-positive and HIV-exposed children lost to follow-up from a large HIV treatment program in western Kenya., Journal of acquired immune deficiency syndromes (1999) 57(3), p. e40-6, url, doi:10.1097/QAI.0b013e3182167f0d

Matthias Egger, Ben D Spycher, John Sidle, Ralf Weigel, Elvin H Geng, Matthew P Fox, Patrick MacPhail, Gilles van Cutsem, Eugène Messou, Robin Wood, Denis Nash, Margaret Pascoe, Diana Dickinson, Jean-François Etard, James A McIntyre, Martin W G Brinkhof, IeDEA East Africa, West Africa and Southern Africa (2011) Correcting mortality for loss to follow-up: a nomogram applied to antiretroviral treatment programmes in sub-Saharan Africa., PLoS medicine 8(1), Gregory P. Bisson (ed.), p. e1000390, url, doi:10.1371/journal.pmed.1000390

2010

Martin W G Brinkhof, Ben D Spycher, Constantin Yiannoutsos, Ralf Weigel, Robin Wood, Eugène Messou, Andrew Boulle, Matthias Egger, Jonathan A C Sterne, International epidemiological Database to Evaluate AIDS (IeDEA) (2010) Adjusting mortality for loss to follow-up: analysis of five ART programmes in sub-Saharan Africa., PloS one 5(11), Geneviève Chêne (ed.), p. e14149, url, doi:10.1371/journal.pone.0014149

Elvin H Geng, David V Glidden, Nneka Emenyonu, Nicolas Musinguzi, Mwebwesa Bosco Bwana, Torsten B Neilands, Winnie Muyindike, Constantin T Yiannoutsos, Steven G Deeks, David R Bangsberg, Jeffrey N Martin (2010) Tracking a sample of patients lost to follow-up has a major impact on understanding determinants of survival in HIV-infected patients on antiretroviral therapy in Africa., Tropical medicine & international health : TM & IH 15 Suppl 1, p. 63-9, url, doi:10.1111/j.1365-3156.2010.02507.x

Elvin H Geng, Mwebesa B Bwana, Jerome Kabakyenga, Winnie Muyindike, Nneka I Emenyonu, Nicholas Musinguzi, Peter Mugyenyi, Jeffrey N Martin, David R Bangsberg (2010) Diminishing availability of publicly funded slots for antiretroviral initiation among HIV-infected ART-eligible patients in Uganda., PloS one 5(11), Landon Myer (ed.), p. e14098, url, doi:10.1371/journal.pone.0014098

Paula Braitstein, Adrian Katshcke, Changyu Shen, Edwin Sang, Winstone Nyandiko, Vincent Ooko Ochieng, Rachel Vreeman, Constantin T Yiannoutsos, Kara Wools-Kaloustian, Samwel Ayaya (2010) Retention of HIV-infected and HIV-exposed children in a comprehensive HIV clinical care programme in Western Kenya., Tropical medicine & international health : TM & IH 15(7), p. 833-41, url, doi:10.1111/j.1365-3156.2010.02539.x

Winstone M Nyandiko, Boaz Otieno-Nyunya, Beverly Musick, Sherri Bucher-Yiannoutsos, Pamela Akhaabi, Karin Lane, Constantin T Yiannoutsos, Kara Wools-Kaloustian (2010) Outcomes of HIV-exposed children in western Kenya: efficacy of prevention of mother to child transmission in a resource-constrained setting., Journal of acquired immune deficiency syndromes (1999) 54(1), p. 42-50, url, doi:10.1097/QAI.0b013e3181d8ad51

Elvin H Geng, David R Bangsberg, Nicolas Musinguzi, Nneka Emenyonu, Mwebesa Bosco Bwana, Constantin T Yiannoutsos, David V Glidden, Steven G Deeks, Jeffrey N Martin (2010) Understanding reasons for and outcomes of patients lost to follow-up in antiretroviral therapy programs in Africa through a sampling-based approach., Journal of acquired immune deficiency syndromes (1999) 53(3), p. 405-11, url, doi:10.1097/QAI.0b013e3181b843f0

2009

Isaac M Kigozi, Loren M Dobkin, Jeffrey N Martin, Elvin H Geng, Winnie Muyindike, Nneka I Emenyonu, David R Bangsberg, Judith A Hahn (2009) Late-disease stage at presentation to an HIV clinic in the era of free antiretroviral therapy in Sub-Saharan Africa., Journal of acquired immune deficiency syndromes (1999) 52(2), p. 280-9, url, doi:10.1097/QAI.0b013e3181ab6eab

2008

Elvin H Geng, Nneka Emenyonu, Mwebesa Bosco Bwana, David V Glidden, Jeffrey N Martin (2008) Sampling-based approach to determining outcomes of patients lost to follow-up in antiretroviral therapy scale-up programs in Africa., JAMA 300(5), p. 506-7, url, doi:10.1001/jama.300.5.506

Marita Mann, Mark N Lurie, Sylvester Kimaiyo, Rami Kantor () Effects of political conflict-induced treatment interruptions on HIV drug resistance., AIDS reviews 15(1), p. 15-24, pubmed